By organizing your team by an affiliation from the comics you can gain certain in game bonuses.

Cheat Effect

Scarlet Witch, Toad, Juggernaut, and Magneto Brotherhood of Evil: adds 5% to your earned EXP
Storm, Wolverine, Collosus, and Nightcrawler New X-Men: +15% to max health
Rogue, Scarlet, Storm, Jean Femme Fatale: 5% DMG Inflicted as Health Gain
Juggernaut, Wolverine, Rogue, Colossus Bruiser Brigade: +20 Energy per Knockout
Sunfire, Magneto, Iceman, Storm Forces of Nature: +10 All Resists
Gambit, Rogue, Cyclops, Jean Double Date: 20 Health per KO
Magneto, Toad, Jean, Cyclops Old School: +15% Max Energy
Any 4 heroes with AoA skins Age of Apocalype: +100% attack rating
Gambit, Wolverine, Rogue, Deadpool Dark Past: 5% DAM inflicted as health gain
Ironman, Magneto, Juggernaut, Colossus Heavy Metal: +10 All Traits
Bishop, Deadpool, Nightcrawler, Gambit Special Ops: +5% Dammage
Magneto, Scarlet Witch, Juggernaut, Professor X Family Affair: +5 Health Regen
Cyclopes, Jean Grey, Ice Man, Toad, Magento, Professor X Old School: +15% Max Energy
Nightcrawler, Storm, Colossus, Wolverine, Sunfire, Bishop New X-Men: +15% Max Health
Gambit, Bishop, Cyclops, Iron Man Energy Corps: +5%Damage
Nightcrawler, Sunfire, Toad, Deadpool Agile Warriors: +5% XP
Iron Man, Scarlet Witch, Wolverine, Bishop New Avengers: +15% Max Health
Ice Man, Professor X, Iron Man, Deadpool Raven Knights: +60% Tech Bit Drops

Level 99- up,down,up,down,left,up,left,right,start
during character selection screen.

All Skills- left,right,left,right,down,up,start during character selection screen.

All Characters- right,left,left,right,up,up,up,
start during character selection screen.

Cinematics- left,right,right,left,down,down,start during review menu.

All Comicis- right,left,left,right,up,up,right,start during review menu.

God Mode- down,up,down,up,right,down,right,left,
start during pause or character selection screen.