Complete the outlined tasks, and earn the Trophies.
| Trophy | How to unlock |
| Substory Dabbler (Bronze) | Complete 10 substories. |
| Substory Fan (Bronze) | Complete 30 substories. |
| Substory Enthusiast (Bronze) | Complete 50 substories. |
| Substory Addict (Bronze) | Complete 80 substories. |
| Bounty Hunter (Bronze) | Apprehend all hitmen. |
| Gourmet Aficionado (Bronze) | Order the most expensive item(s) in all restaurants. |
| HEAT Action Pro (Bronze) | Finish 50 battles with HEAT actions. |
| Tinkerer (Bronze) | Make a mod weapon. |
| Blogging Debut (Bronze) | Have your first Revelation. |
| Path of the Warrior (Bronze) | Encounter all the masters. |
| Hat Trick (Bronze) | Get a hat trick in darts. |
| Break Ace (Bronze) | Get a break ace in Nine-Ball pool. |
| Karaoke King (Bronze) | Sing all songs at karaoke. |
| Fowl Play (Bronze) | Get a turkey while bowling. |
| Tag Hoarder (Bronze) | Earn a combined total of 10,000 points in cee-lo, cho-han, koi-koi and oicho-kabu. |
| Chip Hoarder (Bronze) | Earn a combined total of 10,000 points in poker, roulette and blackjack. |
| Pro Gamer (Bronze) | Complete trophy conditions for the games in the arcade. Get 10 stuffed animals in UFO Catcher, and get a high score in the shooting game. |
| Skilled Hitter (Bronze) | Hit 2 panels with one ball in the Hard game at the batting cage. |
| Power Driver (Bronze) | Hit a 350 yard drive in Competition Mode in golf. |
| Big Tuna (Bronze) | Catch a tuna. |
| Ultimate Challenger (Bronze) | Play all rounds in Ultimate Skill mode after beating the game. |
| Marathon Runner (Bronze) | Run 42,195km. |
| Key Collector (Silver) | Open all the lockers in the top row in both Kamurocho and Downtown Ryuku. |
| Legendary Champion (Silver) | Claim victory in all Coliseum tournaments. |
| Walking Bank (Silver) | Accumulate 10,000,000 yen. |
| Substory Completionist (Gold) | Complete all substories. |
| Minigame Master (Gold) | Complete all minigames. |
| Testament to Strength (Gold) | Beat the game on Extra Hard. |
| Secret Trophies | - |
| Majima Defeated (Bronze) | Defeat Majima in Chapter 1 |
| Rikiya Defeated (Bronze) | Defeat Rikiya in Chapter 2 |
| Tamashiro Defeated (Bronze) | Defeat Tamashiro in Chapter 3 |
| Hasebe Defeated (Bronze) | Defeat Hasebe in Chapter 4 |
| Mysterious Foreigner Defeated (Bronze) | Defeat the Mysterious Foreigner in Chapter 5 Bronze |
| Kanda Defeated (Bronze) | Defeat Kanda in Chapter 6 |
| Majima Defeated Again (Bronze) | Defeat Majima again in Chapter 7 |
| Lau Ka Long Defeated (Bronze) | Defeat Lau Ka Long in Chapter 8 |
| Fuma Defeated (Bronze) | Defeat Fuma in Chapter 10 |
| Thank You! -YAKUZA 3 Team- (Bronze) | Beat the game |
| Careless Dragon (Bronze) | Knock over 100 people |
| People Watcher (Bronze) | Initiate 10 battles using first-person mode |
| Compulsive Vandal (Bronze) | Break 100 weapons picked up in battle |
| Volunteer (Bronze) | Pick up 5 pieces of trash on Sunshine Beach |
| Mine Defeated (Silver) | Defeat Mine in Chapter 12 |
| Master Enviornmentalist (Silver) | Pick up 30 pieces of trash on Sunshine Beach |